• Rozales, K., , Younis, A., Kellerman, L., Heinrich, R., Berlin, S. and Shalgi, R. Differential roles for DNAJ isoforms in HTT-polyQ and mutant FUS aggregation modulation revealed by chaperone network screens. bioRXiv 2021

  • Sabath, N.*, Levy-Adam, F.*, Younis, A.*, Rozales, K., Meller, A., Hadar, S., Soueid-Baumgarten, S., Shalgi, R. Cellular proteostasis decline in human senescence. PNAS. 2020 Dec. PDF. *Equal contribution.

  • Nir Gonen#, Anatoly Meller#, Niv Sabath and Reut Shalgi. Amino acid biosynthesis regulation during ER stress is coupled to protein expression demands. iScience. 2019 July. PDF # These authors contributed equally to the work.

  • Nir Gonen, Niv Sabath, Christopher B. Burge, and Reut Shalgi. Widespread PERK-dependent repression of ER targets in response to ER stress. Scientific Reports​. 2019 March. PDF

  • Eli Rogers*, Reem Jada*, Kinneret Schragenheim-Rozales*, Megha Sah, Marisol Cortes, Matthew Florence, Nina Levy, Rachel Embrey Moss, Randall Walikonis, Raz Palty, Reut Shalgi, Daniela Lichtman, Alexandra Kavushansky, Nashaat Z. Gerges, Itamar Kahn, George Kwabena Essien Umanah, Andrew Peter Levy. An IQSEC2 mutation associated with intellectual disability and autism results in decreased surface AMPA receptors.  Frontiers in Molecular Neuroscience. 2019 Feb. *These authors contributed equally to the work.                                           

  • Yuval Wiesel, Niv Sabath and Reut Shalgi. DoGFinder: a software for the discovery and quantification of readthrough transcripts from RNA-seq. BMC Genomics, 2018 Aug. PDF.

  • Anna Vilborg, Niv Sabath, Yuval Weisel, Jenny Nathans, Flonia Levi-Adam, Therese A. Yario, Joan A. Steitz, and Reut Shalgi. Comparative analysis reveals genomic features of stress-induced transcriptional readthroughPNAS, 2017 Sept. PDF.

  • Reut Shalgi, Jessica A Hurt, Susan Lindquist and Christopher B Burge. Widespread Inhibition of Posttranscriptional Splicing Shapes the Cellular Transcriptome following Heat Shock. Cell Reports, 2014, June. Pubmed. PDF.

 

  • Reut Shalgi, Jessica A Hurt, Irina Krykbaeva, Mikko Taipale, Susan Lindquist and Christopher B Burge. Widespread regulation of translation by elongation pausing in heat shock. Molecular Cell, 2013 Feb. Pubmed. PDF.

 

  • Dvir Dahary*, Reut Shalgi* and Yitzhak Pilpel. A likely evolutionary origin of microRNAs in animals. Mol Biol Evol, 2011 May.

       * These authors equally contributed to this work

 

  • Reut Shalgi, Yitzhak Pilpel and Moshe Oren. Repression of transposable-elements – A miRNA anti-cancer defense mechanism. Trends in Genetics, 2010 Jun.

 

  • Roi Avraham, Aldema Sas-Chen, Ohad Manor, Israel Steinfeld, Reut Shalgi, Gabi Tarcic, Ido Amit, Gad Getz, Anne-Lise Børresen-Dale, Yitzhak Pilpel, Zohar Yakhini, Eran Segal and Yosef Yarden. EGF downregulates miRNAs that normally restrain oncogenic transcription factors. Sci Signal, 2010 Jun.

 

  • Reut Shalgi, Ran Brosh, Moshe Oren, Yitzhak Pilpel, and Varda Rotter. Coupling transcriptional and post-transcriptional miRNA regulation in the control of cell fate. Aging, 2009 Sept.

 

  • Nanna R. Christoffersen, Reut Shalgi, Lisa B. Franke, Mikkel Klausen, Yitzhak Pilpel, Finn Cilius Nielsen, Moshe Oren and Anders H. Lund. p53-independent upregulation of miR-34a during oncogene-induced senescence represses MYC. Cell Death and Differentiation, 2009 Aug.

 

  • Ran Brosh*, Reut Shalgi*, Atar Liran, Gilad Landan, Katya Korotayev, Giang Nguyen, Espen Enerly, Hilde Johnsen, Yosef Buganim, Hilla Solomon, Ido Goldstein, Shalom Madar, Naomi Goldfinger, Anne-Lise Børresen-Dale, Doron Ginsberg, Curtis C. Harris, Yitzhak Pilpel, Moshe Oren and Varda Rotter. p53-repressed miRNAs are Involved with E2F in a Feed Forward Loop Promoting Proliferation. Molecular Systems Biology, 2008 Nov.

       *These authors contributed equally to this work.

 

  • Reut Shalgi, Daniel Lieber, Moshe Oren and Yitzhak Pilpel, Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comp. Biol. 2007 Jul.

 

  • Yaguang Xi, Reut Shalgi, Oystein Fodstad,Yitzhak Pilpel, and Jingfang Ju, Differentially Regulated Micro-RNAs and Actively Translated Messenger RNA Transcripts by Tumor Suppressor p53 in Colon Cancer. Clin Cancer Res. 2006 Apr.

 

  • Reut Shalgi, Michal Lapidot, Ron Shamir and Yitzhak Pilpel, A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs. Genome Biology 2005 Sep. 

 

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